library construction ENA Upload Tool

No description specified

Attributes

Name	Type	Description	PID	ISA Tag	Unit
Input*	Registered Sample List - /templates/41	Existing Samples in DataHub that represent input for this protocol.	-	-	-
library construction*	String	Type of assay or experimental step performed.	-	other_material	-
library_construction_protocol	String	Free form text describing the protocol by which the sequencing library was constructed.	-	protocol	-
title*	String	Short text that can be used to call out experiment records in searches or in displays.	-	other_material_characteristic	-
design_description	String	The design of the library including details of how it was constructed.	-	parameter_value	-
library_name*	String	Name of the library to be published in ENA	-	other_material_characteristic	-
library_source*	Controlled Vocabulary - library_source	The LIBRARY_SOURCE specifies the type of source material that is being sequenced. (SRA 1.2 documentation)	-	parameter_value	-
library_strategy*	Controlled Vocabulary - library_strategy	Sequencing technique intended for this library (SRA 1.2 documentation)	-	parameter_value	-
library_selection*	Controlled Vocabulary - library_selection	Whether any method was used to select for or against, enrich, or screen the material being sequenced. (SRA 1.2 documentation)	-	parameter_value	-
library_layout*	Controlled Vocabulary - library_layout	specifies whether to expect single, paired, or other configuration of reads. In the case of paired reads, information about the relative distance and orientation is specified.	-	parameter_value	-
insert_size	String	Insert size for paired reads.	-	parameter_value	-
platform*	Controlled Vocabulary - platform	a parameter to report the sequencing instrument model and make	-	parameter_value	-
instrument_model*	Controlled Vocabulary - instrument_model	a parameter to report the sequencing instrument model and make	-	parameter_value	-
accession	String	ENA experiment accession code. Provided by ENA after submission.	-	other_material_characteristic	-
submission_date	String	Date in which run was submitted to ENA.	-	other_material_characteristic	-
status	Controlled Vocabulary - status	Status of submission to ENA.	-	other_material_characteristic	-

Name

Type

Description

PID

ISA Tag

Unit

Input*

Registered Sample List - /templates/41

Existing Samples in DataHub that represent input for this protocol.

library construction*

String

Type of assay or experimental step performed.

other_material

library_construction_protocol

String

Free form text describing the protocol by which the sequencing library was constructed.

protocol

title*

String

Short text that can be used to call out experiment records in searches or in displays.

other_material_characteristic

design_description

String

The design of the library including details of how it was constructed.

parameter_value

library_name*

String

Name of the library to be published in ENA

other_material_characteristic

library_source*

Controlled Vocabulary - library_source

The LIBRARY_SOURCE specifies the type of source material that is being sequenced. (SRA 1.2 documentation)

parameter_value

library_strategy*

Controlled Vocabulary - library_strategy

Sequencing technique intended for this library (SRA 1.2 documentation)

parameter_value

library_selection*

Controlled Vocabulary - library_selection

Whether any method was used to select for or against, enrich, or screen the material being sequenced. (SRA 1.2 documentation)

parameter_value

library_layout*

Controlled Vocabulary - library_layout

specifies whether to expect single, paired, or other configuration of reads. In the case of paired reads, information about the relative distance and orientation is specified.

parameter_value

insert_size

String

Insert size for paired reads.

parameter_value

platform*

Controlled Vocabulary - platform

a parameter to report the sequencing instrument model and make

parameter_value

instrument_model*

Controlled Vocabulary - instrument_model

a parameter to report the sequencing instrument model and make

parameter_value

accession

String

ENA experiment accession code. Provided by ENA after submission.

other_material_characteristic

submission_date

String

Date in which run was submitted to ENA.

other_material_characteristic

status

Controlled Vocabulary - status

Status of submission to ENA.

other_material_characteristic

library construction ENA Upload Tool

Attributes

Related items