Metabolights - Mass Spectrometry

No description specified

SEEK ID: https://sandbox1.datahub.vib.be/templates/25

Submitter: System

Projects: Default Project

Version: 1.0.0

Group: metabolights

0 Sample type is referencing this Experiment Sample Template

ISA Level: assay - data file

Organism: any

Parent Template: None

Child Templates:

Attributes

Name	Type	Description	PID	ISA Tag	Unit
Input chromatogram*	Registered Sample List - /templates/25	Chromatogram used for the mass spectrometry analysis.	-	-	-
MS Protocol*	String	Provide a detailed description of the experimental or technical procedures used during the experiment.	-	protocol	-
Scan polarity*	Controlled Vocabulary - Scan polarity	An acquisition mode to which specifies weather polarity is negative, positive or alternating.	-	parameter_value	-
Scan m/z range	String	The limits of m/z over which a mass spectrometer can detect ions. E.g. '50-1000'.	-	parameter_value	-
instrument	Controlled Vocabulary - instrument	The name of the mass spectrometry instrument, manufacturer, model.	-	parameter_value	-
Ion source	Controlled Vocabulary - Ion source	The ion source use PSI-MS cv Ionization mode (EI, APCI, ESI#), vacuum pressure skimmer/focusing lens voltages (e.g. capillary voltage etc.) gas flows (e.g. nebulization gas, cone gas etc.) source temperature	-	parameter_value	-
Mass analyzer	Controlled Vocabulary - Mass analyzer	The analyzer(s) used by the mass spectrometer, use PSI-MS ontology terms	-	parameter_value	-
MS Assay Name*	String	User-defined name for a MS assay.	-	data_file_comment	-
Raw Spectral Data File*	String	Name of the raw spectral data file generated by an assay. Do not include any folder names, only the filename.	-	data_file	-

(v.1.15.2)